miRBase entry: ame-mir-125

Stem-loop ame-mir-125


Accession
MI0001578
Description
Apis mellifera ame-mir-125 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
2 open access papers mention ame-mir-125
(4 sentences)

Sequence

guaaagccugccgcgucgccgguCCCCUGAGACCCUAACUUGUGAcgucgcgaccgauaucucacaggcuagauucucugguauuggcgaugagugcugccuuuugc
(((((((..(((.((((((((((.((..((((..(((.(((((((.((((....))))...))))))).)))..)))).)).)))))))))).).)).))..)))))

Structure
     --  cu  - g          C  CU    CC   A       --c    c 
guaaa  gc  gc c cgucgccggu CC  GAGA  CUA CUUGUGA   gucg g
|||||  ||  || | |||||||||| ||  ||||  ||| |||||||   ||||  
cguuu  cg  cg g guagcgguua gg  cucu  gau ggacacu   uagc a
     uc  -u  u a          u  -u    ua   c       cua    c 


Annotation confidence Not enough data
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Genome context
CM000061.5: 8437175-8437281 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ame-mir-125
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ame-miR-125-5p

Accession MIMAT0001474
Description Apis mellifera ame-miR-125-5p mature miRNA
Sequence 24 - CCCCUGAGACCCUAACUUGUGA - 45
Evidence experimental
array [1], RTPCR [2], Illumina [3]

References

  1. PubMed ID: 17543122
    Computational and transcriptional evidence for microRNAs in the honey bee genome
    Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG
    Genome Biol (2007) 8:R97

  2. PubMed ID: 22409512
    Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
    "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
    "Genes Brain Behav (2012) 11:660-670

  3. PubMed ID: 20491979
    Correlated expression patterns of microRNA genes with age-dependent behavioural changes in honeybee
    "Behura SK, Whitfield CW"
    "Insect Mol Biol (2010) 19:431-439