Stem-loop sequence sbi-MIR319a

Accession

MI0001573 (change log)

Previous IDs

sbi-MIR319

Description

Sorghum bicolor miR319 stem-loop

Gene family

MIPF0000010; MIR159

Literature search

6 open access papers mention sbi-MIR319a
(19 sentences)

Stem-loop

       c       ---uu    -----uau  -cc   u   a a    gu           cu     gc     ua        ----   g  g   ac        c  ca   c    aaac   ca  g 
5' cugc gccaugg     guga        gg   gga gga g gagc  ccuucagucca  caggg  ggugc  gggucgaa    uua cu ccg  ucauucac ca  ugc aagc    ggc  ug a
   |||| |||||||     ||||        ||   ||| ||| | ||||  |||||||||||  |||||  |||||  ||||||||    ||| || |||  |||||||| ||  ||| ||||    |||  ||  
3' gacg cgguacc     cauu        cc   ccu ccu c cucg  ggaagucaggu  guuuc  ccacg  ucuagcuu    aau ga ggc  aguaagug gu  acg uucg    ucg  gc a
       -       cauuu    uguuaauu  ucc   -   c -    ug           uc     ua     -c        cgaa   g  g   ga        a  ag   u    ---a   -a  a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sorghum_bicolor_NCBIv3; GCA_000003195.3): chr3: 1244769-1245017 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000079B117_4558
• miRBase Tracker:MI0001573

Mature sequence sbi-miR319a

• Accession: MIMAT0001469
• Previous IDs: sbi-MIR319;sbi-miR319
• Sequence: 191 - uuggacugaagggugcuccc - 210
• Evidence: by similarity; MI0001099

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).