Stem-loop sequence sbi-MIR169f

Accession

MI0001560 (change log)

Description

Sorghum bicolor miR169f stem-loop

Gene family

MIPF0000012; MIR169_1

Literature search

4 open access papers mention sbi-MIR169f
(23 sentences)

Stem-loop

   -c         acu   cu   -         u    u       gc ----u    u -   - -    -        c 
5'   gaugagagc   gcu  ggu agccaagga gacu gccugug  c     ccac c cac c ugcg gcaggagg u
     |||||||||   |||  ||| ||||||||| |||| |||||||  |     |||| | ||| | |||| ||||||||  
3'   cuacucucg   cga  ccg ucgguuccu cuga cggacgc  g     ggug g gug g gcgc cgucuucu c
   uc         --g   cu   a         -    -       ua cuguu    u u   u c    g        u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sorghum_bicolor_NCBIv3; GCA_000003195.3): chr2: 64543540-64543687 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from sbi-MIR169f

• sbi-MIR169f: chr2: 64543540-64543687 [+]
• sbi-MIR169g: chr2: 64546373-64546524 [+]

Database links

• miRBase Tracker:MI0001560

Mature sequence sbi-miR169f

• Accession: MIMAT0001456
• Previous IDs: sbi-MIR169f
• Sequence: 21 - uagccaaggaugacuugccug - 41
• Evidence: by similarity; MI0001125

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).