miRBase entry: sbi-MIR169d

Stem-loop sbi-MIR169d


Accession
MI0001558
Description
Sorghum bicolor sbi-MIR169d precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
4 open access papers mention sbi-MIR169d
(28 sentences)

Sequence

gaagaagaggggccuugcaugguggcgagagccugccuuuggUAGCCAAGGAUGACUUGCCUacauggcauugcgaguuccgguugcauggccaguucagcugaguuuguGGGCGGUCACCUUGGCUAGCcugaguggcucuugccugucauggaaggccucuucuucuguc
..((((((((((((((.(((((.((((((((((...(((.(((((((((((.(((((.(((((((((((..(((((.......)))))..)))).............)))))))))))))))))))).))).))).))))))))))..))))).)))))).))))))))...

Structure
-ga        -      g     -u          ugc   u   -        A     U       -------------    au     gu 
   agaagagg ggccuu caugg  ggcgagagcc   cuu ggU AGCCAAGG UGACU GCCUaca             uggc  ugcga  u
   |||||||| |||||| |||||  ||||||||||   ||| ||| |||||||| ||||| |||||||             ||||  |||||  c
   ucuucuuc ccggaa guacu  ccguucucgg   gag cCG UCGGUUCC ACUGG CGGGugu             accg  acguu  c
cug        u      g     gu          --u   u   A        -     -       uugagucgacuug    gu     gg 


Annotation confidence Not enough data
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Genome context
chr6: 39811386-39811557 [+]

Database links

Mature sbi-miR169d-5p

Accession MIMAT0001454
Description Sorghum bicolor sbi-miR169d-5p mature miRNA
Sequence 43 - UAGCCAAGGAUGACUUGCCU - 62
Evidence not_experimental

Mature sbi-miR169d-3p

Accession MIMAT0026431
Description Sorghum bicolor sbi-miR169d-3p mature miRNA
Sequence 111 - GGGCGGUCACCUUGGCUAGC - 130
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 22747909
    Computational identification and analysis of novel sugarcane microRNAs
    Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
    BMC Genomics (2012) 13:290