miRBase entry: sbi-MIR396a

Stem-loop sbi-MIR396a


Accession
MI0001539
Description
Sorghum bicolor sbi-MIR396a precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
3 open access papers mention sbi-MIR396a
(14 sentences)

Sequence

acauggcccuccuugccgucUUCCACAGCUUUCUUGAACUGcaugcugguagugcugugugcauccguuccaauauuccaagaggcaguucaauaaagcugugggaaauugcagagagagaccag
...((((.(((.((((.((.((((((((((((.(((((((((....(((.((((.((.(.((....)).))).)))))))....))))))))).)))))))))))).)).)))).))).).))).

Structure
aca   - c   c    c  c            C         augc   u    c  u u  a 
   ugg c cuc uugc gu UUCCACAGCUUU UUGAACUGc    ugg agug ug g gc u
   ||| | ||| |||| || |||||||||||| |||||||||    ||| |||| || | ||  
   acc g gag gacg ua agggugucgaaa aacuugacg    acc uuau ac c ug c
--g   a a   a    u  a            u         gaga   -    a  - u  c 


Annotation confidence Not enough data
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Genome context
chr4: 66733975-66734099 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from sbi-MIR396a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sbi-miR396a

Accession MIMAT0001435
Description Sorghum bicolor sbi-miR396a mature miRNA
Sequence 21 - UUCCACAGCUUUCUUGAACUG - 41
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13