Stem-loop sequence sbi-MIR395e

Accession

MI0001537 (change log)

Description

Sorghum bicolor miR395e stem-loop

Gene family

MIPF0000016; MIR395

Literature search

4 open access papers mention sbi-MIR395e
(30 sentences)

Stem-loop

   auua    --       ccc           g               -  a  au 
5'     gguu  ugguguc   gggaguucucu caagcacuucacgag gc cu  u
       ||||  |||||||   ||||||||||| ||||||||||||||| || ||   
3'     ccaa  accguag   uucucaagggg guuugugaaguguuu cg ga  u
   uuua    uc       ---           -               u  a  gu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sorghum_bicolor_NCBIv3; GCA_000003195.3): chr6: 57228710-57228814 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from sbi-MIR395e

• sbi-MIR395e: chr6: 57228710-57228814 [-]
• sbi-MIR395d: chr6: 57228519-57228621 [-]
• sbi-MIR395c: chr6: 57228201-57228273 [-]
• sbi-MIR395f: chr6: 57228009-57228130 [-]

Database links

• RNAcentral:URS00007A7A8B_4558
• miRBase Tracker:MI0001537

Mature sequence sbi-miR395e

• Accession: MIMAT0001433
• Previous IDs: sbi-MIR395e
• Sequence: 66 - gugaaguguuugggggaacuc - 86
• Evidence: by similarity; MI0001036

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).