Stem-loop sequence sbi-MIR395d

Accession

MI0001536 (change log)

Description

Sorghum bicolor miR395d stem-loop

Gene family

MIPF0000016; MIR395

Literature search

4 open access papers mention sbi-MIR395d
(30 sentences)

Stem-loop

   ucaa u ug   u c             g               -  a  u 
5'     g u  gug c ccaggaguucucu caaacacuucacaaa gc cu u
       | |  ||| | ||||||||||||| ||||||||||||||| || || u
3'     c a  cac g gguucucaagggg guuugugaaguguuu cg ga u
   uuua u gu   c u             -               u  a  u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sorghum_bicolor_NCBIv3; GCA_000003195.3): chr6: 57228519-57228621 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from sbi-MIR395d

• sbi-MIR395e: chr6: 57228710-57228814 [-]
• sbi-MIR395d: chr6: 57228519-57228621 [-]
• sbi-MIR395c: chr6: 57228201-57228273 [-]
• sbi-MIR395f: chr6: 57228009-57228130 [-]

Database links

• miRBase Tracker:MI0001536

Mature sequence sbi-miR395d

• Accession: MIMAT0001432
• Previous IDs: sbi-MIR395d
• Sequence: 64 - gugaaguguuugggggaacuc - 84
• Evidence: by similarity; MI0001033

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).