miRBase entry: sbi-MIR395b

Stem-loop sbi-MIR395b


Accession
MI0001533
Description
Sorghum bicolor sbi-MIR395b precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
6 open access papers mention sbi-MIR395b
(32 sentences)

Sequence

guuagguuuggugucccuaggaguucucugcaagcacuucacgaggcaucguuuugagagcuuuuGUGAAGUGUUUGGGGGAACUCuuagugucacaaaucauuu
....((((((.((.(.(((((((((((((.(((((((((((((((((.((.......)))).)))))))))))))))))))))))))))).).))))))))....

Structure
guua      g  u c             g               -  a  gu 
    gguuug ug c cuaggaguucucu caagcacuucacgag gc uc  u
    |||||| || | ||||||||||||| ||||||||||||||| || ||  u
    cuaaac ac g gauuCUCAAGGGG GUUUGUGAAGUGuuu cg ag  u
uuua      -  u u             -               u  -  ag 


Annotation confidence Not enough data
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Genome context
chr6: 57784145-57784249 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from sbi-MIR395b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sbi-miR395b

Accession MIMAT0001429
Description Sorghum bicolor sbi-miR395b mature miRNA
Sequence 66 - GUGAAGUGUUUGGGGGAACUC - 86
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13