Stem-loop sequence sbi-MIR395b

Accession

MI0001533 (change log)

Description

Sorghum bicolor miR395b stem-loop

Gene family

MIPF0000016; MIR395

Literature search

6 open access papers mention sbi-MIR395b
(32 sentences)

Stem-loop

   guua      g  u c             g               -  a  gu 
5'     gguuug ug c cuaggaguucucu caagcacuucacgag gc uc  u
       |||||| || | ||||||||||||| ||||||||||||||| || ||  u
3'     cuaaac ac g gauucucaagggg guuugugaaguguuu cg ag  u
   uuua      -  u u             -               u  -  ag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sorghum_bicolor_NCBIv3; GCA_000003195.3): chr6: 57784145-57784249 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from sbi-MIR395b

• sbi-MIR395a: chr6: 57783551-57783700 [+]
• sbi-MIR395b: chr6: 57784145-57784249 [+]
• sbi-MIR395g: chr6: 57784324-57784391 [+]
• sbi-MIR395h: chr6: 57784485-57784565 [+]

Database links

• miRBase Tracker:MI0001533

Mature sequence sbi-miR395b

• Accession: MIMAT0001429
• Previous IDs: sbi-MIR395b
• Sequence: 66 - gugaaguguuugggggaacuc - 86
• Evidence: by similarity; MI0001036

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).