miRBase entry: sbi-MIR167b

Stem-loop sbi-MIR167b


Accession
MI0001514
Description
Sorghum bicolor sbi-MIR167b precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
3 open access papers mention sbi-MIR167b
(6 sentences)

Sequence

UGAAGCUGCCAGCAUGAUCUAacaacggcauugcuccuccguguagcgcccugugcuugcuuuugcuugucuccauggagaagacagcggcaaagcuuagcuuugcuucgcuuagcuugcuggcuuuucguaugggcuggcggcggguugcugcgugaagcuugcaagugaugguuagaucaugcugugacaguuuca
(((((((((((((((((((((((....((.((((..((.(((((((((.((((((((.((............(((((((((((.(((((((.((((..(((...)))..)))).)).))))).)))))).))))))).))).))))).))))))))).))...))))))....)))))))))))))).).))))))))

Structure
        - -              aacg  a    -uc  c         c     -   u  uuuugcuugucu     -      a     -  a    uu   u 
UGAAGCUG C CAGCAUGAUCUAac    gc uugc   cu cguguagcg ccugu gcu gc            ccaug gagaag cagcg gc aagc  agc  
|||||||| | ||||||||||||||    || ||||   || ||||||||| ||||| ||| ||            ||||| |||||| ||||| || ||||  ||| u
acuuugac g gucguacuagauug    ug aacg   ga gugcgucgu gggcg cgg cg            gguau cuuuuc gucgu cg uucg  ucg  
        a u              guag  -    uuc  a         u     g   u  ------------     g      g     u  a    cu   u 


Annotation confidence Not enough data
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Genome context
chr1: 7229987-7230184 [+]

Database links

Mature sbi-miR167b

Accession MIMAT0001408
Description Sorghum bicolor sbi-miR167b mature miRNA
Sequence 1 - UGAAGCUGCCAGCAUGAUCUA - 21
Evidence not_experimental

References

  1. Identifying microRNAs in plant genomes
    "Maher C, Timmermans M, Stein L, Ware D"
    "Proc IEEE CSB (2004) None:718-723

  2. PubMed ID: 15660154
    Sorghum genome sequencing by methylation filtration
    Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
    PLoS Biol (2005) 3:e13