miRBase entry: sbi-MIR160d

Stem-loop sbi-MIR160d


Accession
MI0001507
Description
Sorghum bicolor sbi-MIR160d precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
3 open access papers mention sbi-MIR160d
(11 sentences)

Sequence

UGCCUGGCUCCCUGUAUGCCAcucgcuuagcugccaacaacucauacuacguuguuaacgacguuggcucuacugcggauggcgugcgaggagccaagca
(((.(((((((.(((((((((.((((.(((..((((((..(....((......))....)..)))))).)))..)))).))))))))).))))))).)))

Structure
   C       C         c    -u   cu      aa ucau  ua 
UGC UGGCUCC UGUAUGCCA ucgc  uag  gccaac  c    ac  c
||| ||||||| ||||||||| ||||  |||  ||||||  |    ||   
acg accgagg gcgugcggu ggcg  auc  cgguug  g    ug  g
   a       a         a    uc   -u      ca caau  uu 


Annotation confidence Not enough data
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Genome context
chr1: 5218433-5218532 [-]

Database links

Mature sbi-miR160d

Accession MIMAT0001401
Description Sorghum bicolor sbi-miR160d mature miRNA
Sequence 1 - UGCCUGGCUCCCUGUAUGCCA - 21
Evidence not_experimental

References

  1. Identifying microRNAs in plant genomes
    "Maher C, Timmermans M, Stein L, Ware D"
    "Proc IEEE CSB (2004) None:718-723

  2. PubMed ID: 15660154
    Sorghum genome sequencing by methylation filtration
    Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
    PLoS Biol (2005) 3:e13