Stem-loop sequence sbi-MIR160d

Accession

MI0001507 (change log)

Description

Sorghum bicolor miR160d stem-loop

Gene family

MIPF0000032; MIR160

Literature search

3 open access papers mention sbi-MIR160d
(11 sentences)

Stem-loop

   u  c       c         cu   -u   cu    acaacucauacu      u 
5'  gc uggcucc uguaugcca  cgc  uag  gcca            acguug u
    || ||||||| |||||||||  |||  |||  ||||            ||||||  
3'  cg accgagg gcgugcggu  gcg  auc  cggu            ugcagc a
   a  a       a         ag   uc   -u    ------------      a 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Sorghum_bicolor_NCBIv3; GCA_000003195.3): chr1: 5218433-5218532 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001507

Mature sequence sbi-miR160d

• Accession: MIMAT0001401
• Sequence: 1 - ugccuggcucccuguaugcca - 21
• Evidence: by similarity; MI0000190

References

1. "Identifying microRNAs in plant genomes" Maher C, Timmermans M, Stein L, Ware D Proc IEEE CSB :718-723(2004).
2. PMID:15660154 "Sorghum genome sequencing by methylation filtration" Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA PLoS Biol. 3:e13(2005).