Stem-loop sequence sbi-MIR156b

Accession

MI0001506 (change log)

Description

Sorghum bicolor miR156b stem-loop

Gene family

MIPF0000008; MIR156

Literature search

8 open access papers mention sbi-MIR156b
(27 sentences)

Stem-loop

   u      -             a      gguu          a 
5'  gacaga agagagugagcac cacggu    ucuuagcaug g
    |||||| ||||||||||||| ||||||    |||||||||| u
3'  cugucu ucucucacucgug gugucg    aggguuguac g
   a      a             c      ----          c 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Sorghum_bicolor_NCBIv3; GCA_000003195.3): chr3: 3415906-3415989 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from sbi-MIR156b

• sbi-MIR156c: chr3: 3416227-3416321 [-]
• sbi-MIR156b: chr3: 3415906-3415989 [-]

Database links

• RNAcentral:URS000078EE36_4558
• miRBase Tracker:MI0001506

Mature sequence sbi-miR156b

• Accession: MIMAT0001400
• Sequence: 1 - ugacagaagagagugagcac - 20
• Evidence: by similarity; MI0000183

References

1. "Identifying microRNAs in plant genomes" Maher C, Timmermans M, Stein L, Ware D Proc IEEE CSB :718-723(2004).
2. PMID:15660154 "Sorghum genome sequencing by methylation filtration" Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA PLoS Biol. 3:e13(2005).