miRBase entry: sbi-MIR166b

Stem-loop sbi-MIR166b


Accession
MI0001499
Description
Sorghum bicolor sbi-MIR166b precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
6 open access papers mention sbi-MIR166b
(13 sentences)

Sequence

ggggaaugauguccgguccgaagacgcugugcggcgaaagcggcggcggcuUCGGACCAGGCUUCAUUCCCc
(((((((((.(((.(((((((((.((((..((.((....)).)))))).))))))))).))).)))))))))

Structure
         u   c         a    gu  g  g 
ggggaauga guc gguccgaag cgcu  gc gc a
||||||||| ||| ||||||||| ||||  || ||  
cCCCUUACU CGG CCAGGCUuc gcgg  cg cg a
         U   A         g    --  g  a 


Annotation confidence Not enough data
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Genome context
chr1: 7384211-7384282 [+]

Database links

Mature sbi-miR166b

Accession MIMAT0001393
Description Sorghum bicolor sbi-miR166b mature miRNA
Sequence 52 - UCGGACCAGGCUUCAUUCCC - 71
Evidence not_experimental

References

  1. Identifying microRNAs in plant genomes
    "Maher C, Timmermans M, Stein L, Ware D"
    "Proc IEEE CSB (2004) None:718-723

  2. PubMed ID: 15660154
    Sorghum genome sequencing by methylation filtration
    Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
    PLoS Biol (2005) 3:e13