miRBase entry: zma-MIR167b

Stem-loop zma-MIR167b


Accession
MI0001476
Description
Zea mays zma-MIR167b precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
29 open access papers mention zma-MIR167b
(132 sentences)

Sequence

22697 reads, 49044 reads per million, 16 experiments
agugcccaagauaaagggUGAAGCUGCCAGCAUGAUCUAacgacggcauugcucugcugcugcagugaggcuugcgagugaugguuaGAUCAUGCUGUGACAGUUUCACUcuuucccuuugggcaca
.(((((((((..(((((((((((((((((((((((((((((.....((((((((.((.(((.......)))..)))))))))))))))))))))))).).))))))))))))))..).)))))))).

Structure
a        - au              - -              gacgg        u  -u   gc 
 gugcccaa g  aaagggUGAAGCUG C CAGCAUGAUCUAac     cauugcuc gc  gcu  a
 |||||||| |  |||||||||||||| | ||||||||||||||     |||||||| ||  |||  g
 cacggguu c  uuucUCACUUUGAC G GUCGUACUAGauug     guagugag cg  cgg  u
a        u cc              A U              -----        -  uu   ag 


Annotation confidence Not enough data
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Genome context
chr5: 7976369-7976495 [+]

Database links

Mature zma-miR167b-5p

Accession MIMAT0001371
Description Zea mays zma-miR167b-5p mature miRNA
Sequence 19 - UGAAGCUGCCAGCAUGAUCUA - 39
Evidence experimental
Illumina [2]

Mature zma-miR167b-3p

Accession MIMAT0015143
Description Zea mays zma-miR167b-3p mature miRNA
Sequence 88 - GAUCAUGCUGUGACAGUUUCACU - 110
Evidence experimental
Illumina [2]

References

  1. Identifying microRNAs in plant genomes
    "Maher C, Timmermans M, Stein L, Ware D"
    "Proc IEEE CSB (2004) None:718-723

  2. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716