Stem-loop sequence xla-mir-20

Accession

MI0001453 (change log)

Description

Xenopus laevis miR-20 stem-loop

Gene family

MIPF0000001; mir-17

Literature search

1 open access papers mention xla-mir-20
(1 sentences)

Stem-loop

   -     -ucca           g     g   ---u  u 
5'  gcagu     aagugcucaua ugcag uag    ug a
    |||||     ||||||||||| ||||| |||    ||  
3'  cguca     uucacggguau auguc auc    ac u
   u     ugaca           a     -   uugu  u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JGIv8.0): chr8L: 48822066-48822139 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from xla-mir-20

• xla-mir-106: chr8L: 48822350-48822405 [-]
• xla-mir-18a-1: chr8L: 48822216-48822294 [-]
• xla-mir-20: chr8L: 48822066-48822139 [-]
• xla-mir-19b: chr8L: 48821956-48822028 [-]
• xla-mir-92a-2: chr8L: 48821825-48821900 [-]
• xla-mir-363: chr8L: 48821690-48821777 [-]

Database links

• miRBase Tracker:MI0001453

Mature sequence xla-miR-20

• Accession: MIMAT0001348
• Sequence: 8 - caaagugcucauagugcagguag - 30
• Evidence: experimental; cloned [1]

References

1. PMID:15642338 "Stage-specific expression of microRNAs during Xenopus development" Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H FEBS Lett. 579:318-324(2005).