miRBase entry: xla-mir-428

Stem-loop xla-mir-428


Accession
MI0001450
Description
Xenopus laevis xla-mir-428 precursor miRNA
Gene family
MIPF0000320; mir-428

Literature search
1 open access papers mention xla-mir-428
(6 sentences)

Sequence

cacauuggccaaacuggggcgcugucuccuuguaucagugagUAAGUGCUCUCUAGUUCGGUUGcugugug
((((.(((((.((((((((((((..(((((......)).)))..))))).).)))))).))))).))))..

Structure
--    u     a      - -     gu   -  ug 
  caca uggcc aacugg g gcgcu  cuc cu  u
  |||| ||||| |||||| | |||||  ||| ||   
  gugu GUUGG UUGAUC C CGUGA  gag ga  a
gu    c     C      U U     AU   u  cu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr8L: 528888-528958 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from xla-mir-428
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xla-miR-428

Accession MIMAT0001345
Description Xenopus laevis xla-miR-428 mature miRNA
Sequence 43 - UAAGUGCUCUCUAGUUCGGUUG - 64
Evidence experimental
cloned [1]

References

  1. PubMed ID: 15642338
    Stage-specific expression of microRNAs during Xenopus development
    "Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H"
    "FEBS Lett (2005) 579:318-324