miRBase entry: ath-MIR414

Stem-loop ath-MIR414


Accession
MI0001425
Description
Arabidopsis thaliana ath-MIR414 precursor miRNA
Gene family
MIPF0000375; MIR414

Literature search
4 open access papers mention ath-MIR414
(7 sentences)

Sequence

ucaucauuaucaucaucaucauauUCAUCUUCAUCAUCAUCGUCAucaucaucaucaucaucguaugagaagauagagaagagugagaguaugagauuugaguugaga
...(((...(((..(((.((((((((.(((((.((.(((((.((.(((((............).)))))).))).)))).))).))))))))))))).)))..)))..

Structure
uca   uua   uc   a        A  -   A  A  -   G  A    - aucau 
   uca   uca  auc ucauauUC UC UUC UC UC AUC UC ucau c     c
   |||   |||  ||| |||||||| || ||| || || ||| || |||| |      
   agu   agu  uag aguaugag ag gag ag ag uag ag agua g     a
-ag   -ug   -u   -        -  u   a  -  a   a  -    u cuacu 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
The status of this sequence as a miRNA has been questioned on the basis of lack of conservation in genomes other than Arabidopsis and rice, moderately poor precursor hairpin structure, lack of identified targets, and low Northern blot signal [2]. This sequence may therefore be removed in subsequent data releases.

Genome context
chr1: 25137456-25137563 [-]

Database links

Mature ath-miR414

Accession MIMAT0001322
Description Arabidopsis thaliana ath-miR414 mature miRNA
Sequence 25 - UCAUCUUCAUCAUCAUCGUCA - 45
Evidence experimental
Northern [1]

References

  1. PubMed ID: 15345049
    Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets
    Wang XJ, Reyes JL, Chua NH, Gaasterland T
    Genome Biol (2004) 5:R65

  2. PubMed ID: 16669754
    MicroRNAS and their regulatory roles in plants
    "Jones-Rhoades MW, Bartel DP, Bartel B"
    "Annu Rev Plant Biol (2006) 57:19-53