miRBase entry: ath-MIR413

Stem-loop ath-MIR413


Accession
MI0001424
Description
Arabidopsis thaliana ath-MIR413 precursor miRNA

Literature search
1 open access papers mention ath-MIR413
(2 sentences)

Sequence

gauccAUAGUUUCUCUUGUUCUGCACauccacuaacuucaggaaccaugucccaguuucagguuagaucaagugggaaaacaaauggaagauuguggcuaugcagaaacuggaacuauucguc
(((..((((((((.....(((((((...((((...((((..........(((((.((((......))..)).))))).........))))...))))...)))))))...))))))))..)))

Structure
   cc        UCUUG       Cau    uaa    aggaaccaug     g  --  ag 
gau  AUAGUUUC     UUCUGCA   ccac   cuuc          uccca uu  uc  g
|||  ||||||||     |||||||   ||||   ||||          ||||| ||  ||   
cug  uaucaagg     aagacgu   ggug   gaag          agggu aa  ag  u
   cu        --uca       auc    uua    -guaaacaaa     g  cu  au 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
The status of this sequence as a miRNA has been questioned on the basis of lack of conservation in genomes other than Arabidopsis and rice, moderately poor precursor hairpin structure, lack of identified targets, and low Northern blot signal [2]. This sequence may therefore be removed in subsequent data releases.

Genome context
chr1: 23058034-23058156 [+]

Database links

Mature ath-miR413

Accession MIMAT0001321
Description Arabidopsis thaliana ath-miR413 mature miRNA
Sequence 6 - AUAGUUUCUCUUGUUCUGCAC - 26
Evidence experimental
Northern [1]

References

  1. PubMed ID: 15345049
    Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets
    Wang XJ, Reyes JL, Chua NH, Gaasterland T
    Genome Biol (2004) 5:R65

  2. PubMed ID: 16669754
    MicroRNAS and their regulatory roles in plants
    "Jones-Rhoades MW, Bartel DP, Bartel B"
    "Annu Rev Plant Biol (2006) 57:19-53