miRBase entry: cbr-mir-41a

Stem-loop cbr-mir-41a


Accession
MI0001421
Description
Caenorhabditis briggsae cbr-mir-41a precursor miRNA
Gene family
MIPF0000096; mir-36


Sequence

ugaaagcaggucccaaaugccuuggugguuuuucgccguagugauacaacaucgaagccauacgauaUCACCGGGUGAAAAACUCCCAaggucgggacauuuuuauuugu
((((((...(((((....(((((((.(((((((((((...((((((.....(((........)))))))))..))))))))))).))))))).))))).)))))).....

Structure
-----      cag     aaau       u           gua      caaca   aag 
     ugaaag   guccc    gccuugg gguuuuucgcc   gugaua     ucg   c
     ||||||   |||||    ||||||| |||||||||||   ||||||     |||    
     auuuuu   caggg    uggaACC UCAAAAAGUGG   CACUau     agc   c
uguuu      --a     ---c       C           -GC      -----   aua 


Annotation confidence Not enough data
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Comments
This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 3 positions.

Genome context
chrII: 8378281-8378390 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from cbr-mir-41a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-41a

Accession MIMAT0001318
Description Caenorhabditis briggsae cbr-miR-41a mature miRNA
Sequence 68 - UCACCGGGUGAAAAACUCCCA - 88
Evidence not_experimental

References

  1. PubMed ID: 12672692
    The microRNAs of Caenorhabditis elegans
    "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
    "Genes Dev (2003) 17:991-1008