miRBase entry: cbr-mir-36

Stem-loop cbr-mir-36

Accession

MI0001416

Description

Caenorhabditis briggsae cbr-mir-36 precursor miRNA

Gene family

MIPF0000096; mir-36

Sequence

ugaaaccuucggaccauugugaauuuuugcugcgguguuacaacuaacaucuguaUCACCGGGUGAAAAUUCGCAAUgguccgauggguauuca
(((((((((((((((((((((((((((((((.(((((.((((.........)))).)))))))))))))))))))))))))))).)))).))))

Structure

    -    -                       g     u    acu 
ugaa accu ucggaccauugugaauuuuugcu cggug uaca   a
|||| |||| ||||||||||||||||||||||| ||||| ||||   a
acuu uggg agccuggUAACGCUUAAAAGUGG GCCAC augu   c
    a    u                       -     U    cua

Annotation confidence Not enough data

Do you think this miRNA is real?

Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 2 teminal 3' end positions.

Genome context

chrII: 8377557-8377650 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from cbr-mir-36

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbr-miR-36

Accession	MIMAT0001314
Description	Caenorhabditis briggsae cbr-miR-36 mature miRNA
Sequence	56 - UCACCGGGUGAAAAUUCGCAAU - 77
Evidence	not_experimental

References

PubMed ID: 12672692
The microRNAs of Caenorhabditis elegans
"Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
"Genes Dev (2003) 17:991-1008