miRBase entry: cbr-mir-254

Stem-loop cbr-mir-254


Accession
MI0001409
Description
Caenorhabditis briggsae cbr-mir-254 precursor miRNA
Gene family
MIPF0000310; mir-254


Sequence

cuccacucuaugcggguugccguauacagaagcaucgauuuucacacgccaugaugcgccugUGCAAAUCUUUUGCAACUGUAUAcggcgauuuagcagaccauauug
..........(((((((((((((((((((..(((..(((((.(((((((......)))..)))).)))))...)))..)))))))))))))))).)))..........

Structure
cuccacucua   -                aa   -uc     u    --   ca 
          ugc ggguugccguauacag  gca   gauuu caca  cgc  u
          ||| ||||||||||||||||  |||   ||||| ||||  |||   
          acg uuuagcggcAUAUGUC  CGU   CUAAA GUgu  gcg  g
guuauaccag   a                AA   UUU     C    cc   ua 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 4 positions.

Genome context
chrX: 5253078-5253185 [+]

Database links

Mature cbr-miR-254

Accession MIMAT0001307
Description Caenorhabditis briggsae cbr-miR-254 mature miRNA
Sequence 63 - UGCAAAUCUUUUGCAACUGUAUA - 85
Evidence not_experimental

References

  1. PubMed ID: 12672692
    The microRNAs of Caenorhabditis elegans
    "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
    "Genes Dev (2003) 17:991-1008