miRBase entry: cbr-mir-240

Stem-loop cbr-mir-240


Accession
MI0001408
Description
Caenorhabditis briggsae cbr-mir-240 precursor miRNA
Gene family
MIPF0000243; mir-240


Sequence

cgcugucuuuauuuugaaacuguuuucaaaucgagaauuucgaggccugaaugcaagaaccguuuugagcaUACUGGCCUCCAAAUUUUCGCUuugaauuuuaguuacgcgug
(((.((...........(((((..((((((.(((((((((.((((((.(.((((..(((....)))..)))).).)))))).))))))))).))))))...))))))))))..

Structure
--   u  cuuuauuuuga     -uu      u         c      u a    aa   c 
  cgc gu           aacug   uucaaa cgagaauuu gaggcc g augc  gaa c
  ||| ||           |||||   |||||| ||||||||| |||||| | ||||  |||  
  gcg ca           uugau   aaguuU GCUUUUAAA CUCCGG C Uacg  uuu g
gu   -  -----------     uuu      C         C      U A    ag   u 


Annotation confidence Not enough data
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Comments
This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 2 positions.

Genome context
chrX: 13610687-13610799 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cbr-mir-240
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-240

Accession MIMAT0001306
Description Caenorhabditis briggsae cbr-miR-240 mature miRNA
Sequence 72 - UACUGGCCUCCAAAUUUUCGCU - 93
Evidence not_experimental

References

  1. PubMed ID: 12672692
    The microRNAs of Caenorhabditis elegans
    "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
    "Genes Dev (2003) 17:991-1008