miRBase entry: cbr-mir-61

Stem-loop cbr-mir-61


Accession
MI0001404
Description
Caenorhabditis briggsae cbr-mir-61 precursor miRNA
Gene family
MIPF0000297; mir-61


Sequence

uacuugaucggugucucgagccgaguuaaggcuaauaguccuuccgguguaugguaaUGACUAGAACCUUGACUCUGCUCgaguuacugagcucuuugaccccgccc
.......((((((.(((((((.(((((((((....(((((.(((((.....))).)).)))))...))))))))).))))))).)))))).................

Structure
----------uacuuga      u       c         cuaa     c  -   g 
                 ucggug cucgagc gaguuaagg    uaguc uu ccg u
                 |||||| ||||||| |||||||||    ||||| || ||| g
                 agucau gagCUCG CUCAGUUCC    AUCAG aa ggu u
cccgccccaguuucucg      u       U         -AAG     U  u   a 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 4 positions.

Genome context
chrV: 9339579-9339685 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cbr-mir-61
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-61

Accession MIMAT0001302
Description Caenorhabditis briggsae cbr-miR-61 mature miRNA
Sequence 58 - UGACUAGAACCUUGACUCUGCUC - 80
Evidence not_experimental

References

  1. PubMed ID: 12672692
    The microRNAs of Caenorhabditis elegans
    "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
    "Genes Dev (2003) 17:991-1008