Stem-loop cbr-mir-253

Accession

MI0001401

Description

Caenorhabditis briggsae cbr-mir-253 precursor miRNA

Gene family

MIPF0000286; mir-253

Sequence

aacauuuuucgaguuucaguccuucucaCACACCUCACUAACACUAACUacagauuucuagauguuaguaggcguugugggaagggcggagaugacgaauacuuugugca
.(((...((((.(((((.(((((((((((((.(((.((((((((((............))).)))))))))).).)))))))))))).)))))..)))).....)))...

Structure

--a   --uuu    -a     a            - A   C       -   ACUac 
   aca     uucg  guuuc guccuucucaCA C CCU ACUAACA CUA     a
   |||     ||||  ||||| |||||||||||| | ||| ||||||| |||      
   ugu     aagc  uagag cgggaagggugu g gga ugauugu gau     g
acg   uucau    ag     g            u c   -       a   cuuua 

Annotation confidence Not enough data

Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 2 positions.

Genome context

chrV: 11596481-11596590 [-]

Mature cbr-miR-253

• Accession: MIMAT0001299
• Description: Caenorhabditis briggsae cbr-miR-253 mature miRNA
• Sequence: 29 - CACACCUCACUAACACUAACU - 49
• Evidence: not_experimental

References

1. PubMed ID: 12672692
   The microRNAs of Caenorhabditis elegans
   "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
   "Genes Dev (2003) 17:991-1008