miRBase entry: cbr-mir-51

Stem-loop cbr-mir-51


Accession
MI0001398
Description
Caenorhabditis briggsae cbr-mir-51 precursor miRNA
Gene family
MIPF0000268; mir-51


Sequence

cgucaucgaaucucaacgucaaacggauccgaagacguccaucUACCCGUAGCUCCUUGCCAUGUUacugguaaaagugaacauggaaguugguccggguacauggccaguaggaguuaugaagacguguugagguuucaagauu
.(((...(((((((((((((....((((........)))).......((((((((((.(((((((..((((...((.(.........).))...))))..)))))))....))))))))))..)))))..))))))))...))).

Structure
c   auc        --     aaacggauccgaagacguccaucUACC          ---U       Ua    uaa  g gaa 
 guc   gaaucuca  acguc                           CGUAGCUCCU    GCCAUGU  cugg   aa u   c
 |||   ||||||||  |||||                           ||||||||||    |||||||  ||||   || |   a
 uag   uuuggagu  ugcag                           guauugagga    cgguaca  ggcc   uu a   u
u   aac        ug     -------------------------aa          ugac       ug    ugg  g agg 


Annotation confidence Not enough data
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Comments
This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 2 positions.

Genome context
chrIV: 7366589-7366733 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cbr-mir-51
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-51

Accession MIMAT0001297
Description Caenorhabditis briggsae cbr-miR-51 mature miRNA
Sequence 44 - UACCCGUAGCUCCUUGCCAUGUU - 66
Evidence not_experimental

References

  1. PubMed ID: 12672692
    The microRNAs of Caenorhabditis elegans
    "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
    "Genes Dev (2003) 17:991-1008