miRBase entry: cbr-mir-246

Stem-loop cbr-mir-246


Accession
MI0001397
Description
Caenorhabditis briggsae cbr-mir-246 precursor miRNA
Gene family
MIPF0000260; mir-246


Sequence

gaaaaguccuagugauaaaacagcaccuggccaauauuauguaauaucagaagcaaauugauuaUUACAUGUAUUGGGUAGGAGCUguucaagcuaugguuaaaugggu
.......((((((.....((((((.((((.(((((((.((((((((((((.......)))).))))))))))))))).)))).))))))...)))).))..........

Structure
---gaaaagu  -    gauaa      a    g       u        -    aa 
          cc uagu     aacagc ccug ccaauau auguaaua ucag  g
          || ||||     |||||| |||| ||||||| |||||||| ||||  c
          gg aucg     uugUCG GGAU GGUUAUG UACAUUau aguu  a
uggguaaauu  u    --aac      A    G       -        u    aa 


Annotation confidence Not enough data
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Comments
This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 2 positions.

Genome context
chrIV: 7431797-7431905 [-]

Database links

Mature cbr-miR-246

Accession MIMAT0001296
Description Caenorhabditis briggsae cbr-miR-246 mature miRNA
Sequence 65 - UUACAUGUAUUGGGUAGGAGCU - 86
Evidence not_experimental

References

  1. PubMed ID: 12672692
    The microRNAs of Caenorhabditis elegans
    "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
    "Genes Dev (2003) 17:991-1008