Stem-loop dre-mir-219-1

Accession

MI0001384

Description

Danio rerio dre-mir-219-1 precursor miRNA

Gene family

MIPF0000044; mir-219

Literature search

7 open access papers mention dre-mir-219-1
(23 sentences)

Sequence

279 reads, 45 reads per million, 5 experiments

agggucccagagauUGAUUGUCCAAACGCAAUUCUUguaacauauaauauaaauccaagaauugugccuggacaucuguugcuggagauuc
.(((((((((.(((.(((.(((((..(((((((((((..................)))))))))))..)))))))).))).)))).)))))

Structure

a     -    a   U   U     AA           uaacauau 
 ggguc ccag gau GAU GUCCA  CGCAAUUCUUg        a
 ||||| |||| ||| ||| |||||  |||||||||||         
 cuuag gguc uug cua caggu  guguuaagaac        a
-     a    g   u   -     cc           cuaaauau 

Annotation confidence High

Genome context

chr10: 10329464-10329554 [-]

Mature dre-miR-219-5p

• Accession: MIMAT0001286
• Description: Danio rerio dre-miR-219-5p mature miRNA
• Sequence: 15 - UGAUUGUCCAAACGCAAUUCUU - 36
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 12624257
   Vertebrate microRNA genes
   "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
   "Science (2003) 299:1540


2. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293