Stem-loop sequence dre-mir-219-1

Accession

MI0001384 (change log)

Description

Danio rerio miR-219-1 stem-loop

Gene family

MIPF0000044; mir-219

Literature search

7 open access papers mention dre-mir-219-1
(23 sentences)

Stem-loop

   a     -    ag  u   u     aa           uaacauau 
5'  ggguc ccag  au gau gucca  cgcaauucuug        a
    ||||| ||||  || ||| |||||  |||||||||||         
3'  cuuag gguc  ug cua caggu  guguuaagaac        a
   -     a    gu  u   -     cc           cuaaauau 

Deep sequencing

326 reads, 0 reads per million, 6 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr10: 10329464-10329554 [-]	sense OTTDART00000042982 ; si:dkeyp-68f6.3-001; intron 1 ENSDART00000134929 ; si:dkeyp-68f6.3-001; intron 1
KZ115309.1: 57794-57884 [-]	sense OTTDART00000042982 ; si:dkeyp-68f6.3-001; intron 1 ENSDART00000134929 ; si:dkeyp-68f6.3-001; intron 1

Database links

• EntrezGene:mir219-1
• EntrezGene:mir219-1
• RNAcentral:URS000075B554_7955
• miRBase Tracker:MI0001384

Mature sequence dre-miR-219-5p

• Accession: MIMAT0001286
• Previous IDs: dre-miR-219
• Sequence: 15 - ugauuguccaaacgcaauucuu - 36
• Deep sequencing: 890 reads, 5 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075A3A0_7955
• Predicted targets:
  • TargetScanFish:dre-miR-219

References

1. PMID:12624257 "Vertebrate microRNA genes" Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP Science. 299:1540(2003).
2. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).