miRBase entry: dre-mir-214

Stem-loop dre-mir-214


Accession
MI0001381
Description
Danio rerio dre-mir-214 precursor miRNA
Gene family
MIPF0000062; mir-214

Literature search
15 open access papers mention dre-mir-214
(206 sentences)

Sequence

2345 reads, 368 reads per million, 11 experiments
ugacugagagcguugucugucugccugucuacacuugcugugcagaacuuccugcaccuguACAGCAGGCACAGACAGGCAGacagauggcagcccgccu
.......(.(((((((((((((((((((((...((((((((((((............))))))))))))...))))))))))))))))))).)).)....

Structure
ugacuga a  -                   aca            aacuu 
       g gc guugucugucugccugucu   cuugcugugcag     c
       | || |||||||||||||||||||   ||||||||||||      
       c cg cgguagacaGACGGACAGA   GGACGACAuguc     c
---uccg c  a                   CAC            cacgu 


Annotation confidence High
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Genome context
chr20: 14877639-14877738 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-214
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-214

Accession MIMAT0001283
Description Danio rerio dre-miR-214 mature miRNA
Sequence 62 - ACAGCAGGCACAGACAGGCAG - 82
Evidence experimental
cloned [1-2]
Database links
Predicted targets

References

  1. PubMed ID: 12624257
    Vertebrate microRNA genes
    "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
    "Science (2003) 299:1540

  2. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293