miRBase entry: dre-mir-205

Stem-loop dre-mir-205


Accession
MI0001378
Description
Danio rerio dre-mir-205 precursor miRNA
Gene family
MIPF0000058; mir-205

Literature search
7 open access papers mention dre-mir-205
(29 sentences)

Sequence

290804 reads, 18442 reads per million, 11 experiments
aaacuacugugcauucuaUCCUUCAUUCCACCGGAGUCUGuguaguuguucaaucaGAUUUCAGUGGUGUGAAGUGUAggaaacacgga
......(((((..((((((.((((((.((((.((((((((((........))..)))))))).)))).)))))).))))))..))))).

Structure
aaacua     ca      C      U    C        --  uag 
      cugug  uucuaU CUUCAU CCAC GGAGUCUG  ug   u
      |||||  |||||| |||||| |||| ||||||||  ||    
      ggcac  aggAUG GAAGUG GGUG CUUUAGac  ac   u
-----a     aa      U      U    A        ua  uug 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr23: 33290273-33290361 [+]

Database links

Mature dre-miR-205-5p

Accession MIMAT0001280
Description Danio rerio dre-miR-205-5p mature miRNA
Sequence 19 - UCCUUCAUUCCACCGGAGUCUG - 40
Evidence experimental
cloned [1-2]
Database links
Predicted targets

Mature dre-miR-205-3p

Accession MIMAT0031925
Description Danio rerio dre-miR-205-3p mature miRNA
Sequence 57 - GAUUUCAGUGGUGUGAAGUGUA - 78
Evidence not_experimental
Database links

References

  1. PubMed ID: 12624257
    Vertebrate microRNA genes
    "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
    "Science (2003) 299:1540

  2. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293