Stem-loop sequence dre-mir-205

Accession

MI0001378 (change log)

Previous IDs

dre-mir-205;dre-mir-205-1

Description

Danio rerio miR-205 stem-loop

Gene family

MIPF0000058; mir-205

Literature search

7 open access papers mention dre-mir-205
(28 sentences)

Stem-loop

   aaacua     ca     uc      u    c        --  uag 
5'       cugug  uucua  cuucau ccac ggagucug  ug   u
         |||||  |||||  |||||| |||| ||||||||  ||    
3'       ggcac  aggau  gaagug ggug cuuuagac  ac   u
   -----a     aa     gu      u    a        ua  uug 

Deep sequencing

382302 reads, 2.33e+04 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr23: 33290273-33290361 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir205
• EntrezGene:mir205
• RNAcentral:URS000075A983_7955
• miRBase Tracker:MI0001378

Mature sequence dre-miR-205-5p

• Accession: MIMAT0001280
• Previous IDs: dre-miR-205
• Sequence: 19 - uccuucauuccaccggagucug - 40
• Deep sequencing: 372888 reads, 11 experiments
• Evidence: experimental; cloned [1-2]
• Database links:
  • RNAcentral:URS0000446722_7955
• Predicted targets:
  • TargetScanFish:dre-miR-205

Mature sequence dre-miR-205-3p

• Accession: MIMAT0031925
• Sequence: 57 - gauuucaguggugugaagugua - 78
• Deep sequencing: 9398 reads, 11 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000783072_7955

References

1. PMID:12624257 "Vertebrate microRNA genes" Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP Science. 299:1540(2003).
2. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).