miRBase entry: dre-mir-199-3

Stem-loop dre-mir-199-3


Accession
MI0001375
Description
Danio rerio dre-mir-199-3 precursor miRNA
Gene family
MIPF0000040; mir-199

Literature search
9 open access papers mention dre-mir-199-3
(16 sentences)

Sequence

27647 reads, 2482 reads per million, 11 experiments
ccucccccucgccugCCCAGUGUUCAGACUACCUGUUCaucaugcugcagcugaACAGUAGUCCGCACAUUGGUUaggcugggcugggacacacacac
..(((((((.(((((.(((((((.(.((((((.((((((.(........).)))))))))))).).))))))).))))).)))..)))).........

Structure
-------cc    --   c     C       U A      C      u aug 
         uccc  ccu gccug CCAGUGU C GACUAC UGUUCa c   c
         ||||  ||| ||||| ||||||| | |||||| |||||| |    
         aggg  ggg cggaU GGUUACA G CUGAUG ACAagu g   u
cacacacac    uc   u     U       C C      -      c acg 


Annotation confidence High
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Genome context
chr3: 47195137-47195234 [-]

Database links

Mature dre-miR-199-5p

Accession MIMAT0001277
Description Danio rerio dre-miR-199-5p mature miRNA
Sequence 16 - CCCAGUGUUCAGACUACCUGUUC - 38
Evidence experimental
cloned [1-2]
Database links
Predicted targets

Mature dre-miR-199-3-3p

Accession MIMAT0031922
Description Danio rerio dre-miR-199-3-3p mature miRNA
Sequence 55 - ACAGUAGUCCGCACAUUGGUU - 75
Evidence not_experimental
Database links

References

  1. PubMed ID: 12624257
    Vertebrate microRNA genes
    "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
    "Science (2003) 299:1540

  2. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293