miRBase entry: dre-mir-10a

Stem-loop dre-mir-10a


Accession
MI0001363
Description
Danio rerio dre-mir-10a precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
18 open access papers mention dre-mir-10a
(191 sentences)

Sequence

23608 reads, 888 reads per million, 11 experiments
ugucugucaucuauauaUACCCUGUAGAUCCGAAUUUGUgugaauauacagucgCAAAUUCGUGUCUUGGGGAAUAuguaguugacauaaacacaacgc
(((.(((((.((((((((.(((((.((((.((((((((((............)))))))))).))))))))).)))))))).)))))...)))......

Structure
------   --c     u        A     U    C          ugaau 
      ugu   uguca cuauauaU CCCUG AGAU CGAAUUUGUg     a
      |||   ||||| |||||||| ||||| |||| ||||||||||      
      aca   acagu gauguAUA GGGGU UCUG GCUUAAACgc     u
cgcaac   aau     u        A     -    U          ugaca 


Annotation confidence Not enough data
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Genome context
chr12: 27134869-27134967 [+]

Database links

Mature dre-miR-10a-5p

Accession MIMAT0001267
Description Danio rerio dre-miR-10a-5p mature miRNA
Sequence 18 - UACCCUGUAGAUCCGAAUUUGU - 39
Evidence experimental
cloned [1-2]
Database links
Predicted targets

Mature dre-miR-10a-3p

Accession MIMAT0003391
Description Danio rerio dre-miR-10a-3p mature miRNA
Sequence 55 - CAAAUUCGUGUCUUGGGGAAUA - 76
Evidence experimental
cloned [2]
Database links

References

  1. PubMed ID: 12624257
    Vertebrate microRNA genes
    "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
    "Science (2003) 299:1540

  2. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293