Stem-loop sequence dre-mir-10a

Accession

MI0001363 (change log)

Description

Danio rerio miR-10a stem-loop

Gene family

MIPF0000033; mir-10

Literature search

18 open access papers mention dre-mir-10a
(188 sentences)

Stem-loop

   --------uguc     u        a     u   uc          ugaau 
5'             uguca cuauauau cccug aga  cgaauuugug     a
               ||||| |||||||| ||||| |||  ||||||||||      
3'             acagu gauguaua ggggu ucu  gcuuaaacgc     u
   cgcaacacaaau     u        a     -   gu          ugaca 

Deep sequencing

479867 reads, 2.82e+04 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr12: 27134869-27134967 [+]	intergenic
KZ115384.1: 38985-39083 [+]	intergenic

Database links

• EntrezGene:mir10a
• EntrezGene:mir10a
• RNAcentral:URS000075B379_7955
• miRBase Tracker:MI0001363

Mature sequence dre-miR-10a-5p

• Accession: MIMAT0001267
• Previous IDs: dre-miR-10a
• Sequence: 18 - uacccuguagauccgaauuugu - 39
• Deep sequencing: 478796 reads, 11 experiments
• Evidence: experimental; cloned [1-2]
• Database links:
  • RNAcentral:URS000055DE1B_7955
• Predicted targets:
  • TargetScanFish:dre-miR-10a

Mature sequence dre-miR-10a-3p

• Accession: MIMAT0003391
• Previous IDs: dre-miR-10a*
• Sequence: 55 - caaauucgugucuuggggaaua - 76
• Deep sequencing: 1071 reads, 6 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS000075BED4_7955

References

1. PMID:12624257 "Vertebrate microRNA genes" Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP Science. 299:1540(2003).
2. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).