Stem-loop sequence dre-mir-7b

Accession

MI0001360 (change log)

Description

Danio rerio miR-7b stem-loop

Gene family

MIPF0000022; mir-7

Literature search

13 open access papers mention dre-mir-7b
(106 sentences)

Stem-loop

   ugaac     -    cuu     u  a     u       u     ug  aguu 
5'      gcugg cuug   cugug gg agacu gugauuu guugu  uu    a
        ||||| ||||   ||||| || ||||| ||||||| |||||  ||     
3'      cgacc ggac   gacau cc ucugg cacuaaa caaca  ga    g
   --cua     c    -ac     c  g     -       -     gu  agua 

Deep sequencing

3767 reads, 118 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr5: 55607744-55607847 [-]
• Overlapping transcripts:

  sense

  OTTDART00000040008 ; hnrpkl-002; intron 12

  OTTDART00000040007 ; hnrpkl-001; intron 15

  ENSDART00000139236 ; hnrpkl-002; intron 12

  ENSDART00000005671 ; hnrpkl-201; intron 14

  ENSDART00000133156 ; hnrpkl-001; intron 15

Database links

• EntrezGene:mir7b
• EntrezGene:mir7b
• RNAcentral:URS000075D938_7955
• miRBase Tracker:MI0001360

Mature sequence dre-miR-7b

• Accession: MIMAT0001265
• Sequence: 23 - uggaagacuugugauuuuguu - 43
• Deep sequencing: 3707 reads, 11 experiments
• Evidence: experimental; PCR [1]
• Database links:
  • RNAcentral:URS000075DCD0_7955
• Predicted targets:
  • TargetScanFish:dre-miR-7b

References

1. PMID:12624257 "Vertebrate microRNA genes" Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP Science. 299:1540(2003).