Stem-loop sequence dps-mir-5

Accession

MI0001298 (change log)

Description

Drosophila pseudoobscura miR-5 stem-loop

Gene family

MIPF0000309; mir-5

Stem-loop

   --    -       c               cgu    u 
5'   gcua aaaggaa gaucguugugauaug   uaau c
     |||| ||||||| |||||||||||||||   |||| a
3'   cgau uuuccuu uuagugacacuauac   auug c
   cg    a       -               ---    c 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (dpse_r2.26_FB2012_01): 3: 12677240-12677311 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dps-mir-5

• dps-mir-309: 3: 12677889-12677956 [-]
• dps-mir-3: 3: 12677755-12677827 [-]
• dps-mir-286: 3: 12677589-12677685 [-]
• dps-mir-4: 3: 12677418-12677498 [-]
• dps-mir-5: 3: 12677240-12677311 [-]
• dps-mir-6-1: 3: 12677098-12677177 [-]
• dps-mir-6-2: 3: 12676947-12677029 [-]
• dps-mir-6-3: 3: 12676804-12676883 [-]

Database links

• miRBase Tracker:MI0001298

Mature sequence dps-miR-5

• Accession: MIMAT0001207
• Sequence: 5 - aaaggaacgaucguugugauaug - 27
• Evidence: by similarity; MI0000123, MI0000123