Stem-loop sequence gga-mir-7b

Accession

MI0001279 (change log)

Previous IDs

gga-mir-7b-1

Description

Gallus gallus miR-7b stem-loop

Gene family

MIPF0000022; mir-7

Literature search

12 open access papers mention gga-mir-7b
(155 sentences)

Stem-loop

   ------u  a   u     a  u        a     a      uu       --     a 
5'        gg cau ggucu gu cugugugg agacu gugauu  uguuguu  uuuag u
          || ||| ||||| || |||||||| ||||| ||||||  |||||||  |||||  
3'        cc gua ucaga ca gguauacc ucuga cacuaa  acaacag  aaauc a
   gacaucu  -   -     -  c        a     -      --       uu     a 

Deep sequencing

2480 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chrW: 3067226-3067335 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:
• miRBase Tracker:MI0001279

Mature sequence gga-miR-7b

• Accession: MIMAT0001192
• Sequence: 23 - uggaagacuagugauuuuuguu - 44
• Deep sequencing: 2140 reads, 5 experiments
• Evidence: experimental; cloned [2]
• Predicted targets:
  • TargetScanVert:gga-miR-7b
  • miRDB:gga-miR-7b

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. " McBride D, Carre W, Law A, Clinton M Unpublished.