Stem-loop sequence gga-mir-122-1

Accession

MI0001277 (change log)

Previous IDs

gga-mir-122a-1

Description

Gallus gallus miR-122-1 stem-loop

Gene family

MIPF0000095; mir-122

Literature search

17 open access papers mention gga-mir-122-1
(86 sentences)

Stem-loop

   ----   -      gg       c           ugucc 
5'     cag agcugu  aguguga aaugguguuug     a
       ||| ||||||  ||||||| |||||||||||      
3'     guc ucgaua  ucacacu uuaccgcaaac     a
   gaug   a      aa       a           uaucu 

Deep sequencing

69166 reads, 760 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chrZ: 761121-761197 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-122-1

• gga-mir-122-1: chrZ: 761121-761197 [+]
• gga-mir-12294: chrZ: 768922-768982 [+]

Database links

• EntrezGene:
• RNAcentral:URS0000759A85_9031
• miRBase Tracker:MI0001277

Mature sequence gga-miR-122-5p

• Accession: MIMAT0001190
• Previous IDs: gga-miR-122a
• Sequence: 9 - uggagugugacaaugguguuugu - 31
• Deep sequencing: 138240 reads, 5 experiments
• Evidence: experimental; cloned [2], Northern [2], Illumina [3]
• Database links:
  • RNAcentral:URS00001B8558_9031
• Predicted targets:
  • TargetScanVert:gga-miR-122-5p
  • miRDB:gga-miR-122-5p

Mature sequence gga-miR-122-3p

• Accession: MIMAT0026550
• Sequence: 45 - aacgccauuaucacacuaaaua - 66
• Deep sequencing: 92 reads, 2 experiments
• Evidence: experimental; Illumina [3]
• Predicted targets:
  • TargetScanVert:gga-miR-122-3p
  • miRDB:gga-miR-122-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. PMID:16750530 "Identification of microRNAs from different tissues of chicken embryo and adult chicken" Xu H, Wang X, Du Z, Li N FEBS Lett. 580:3610-3616(2006).
3. " McBride D, Carre W, Law A, Clinton M Unpublished.
4. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).