Stem-loop gga-mir-31

Accession

MI0001276

Description

Gallus gallus gga-mir-31 precursor miRNA

Gene family

MIPF0000064; mir-31

Literature search

12 open access papers mention gga-mir-31
(52 sentences)

Sequence

904 reads, 71 reads per million, 5 experiments

uucuuucaugcagagcuggaggggAGGCAAGAUGUUGGCAUAGCUGuuaaccuaaaaaccUGCUAUGCCAACAUAUUGUCAUCuuuccugucug
..........((((.(.(((((((.(((((.(((((((((((((.(((........)))..))))))))))))).))))).))))))).)))))

Structure

uucuuucaug    g u       A     G             -U   aac 
          caga c ggagggg GGCAA AUGUUGGCAUAGC  Guu   c
          |||| | ||||||| ||||| |||||||||||||  |||    
          gucu g ccuuuCU CUGUU UACAACCGUAUCG  caa   u
----------    - u       A     A             Uc   aaa 

Annotation confidence High

Genome context

chrZ: 78512252-78512345 [-]

Mature gga-miR-31-5p

• Accession: MIMAT0001189
• Description: Gallus gallus gga-miR-31-5p mature miRNA
• Sequence: 25 - AGGCAAGAUGUUGGCAUAGCUG - 46
• Evidence: experimental ; Illumina [2]

Mature gga-miR-31-3p

• Accession: MIMAT0026549
• Description: Gallus gallus gga-miR-31-3p mature miRNA
• Sequence: 61 - UGCUAUGCCAACAUAUUGUCAUC - 83
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45