miRBase entry: gga-mir-7-3

Stem-loop gga-mir-7-3


Accession
MI0001269
Description
Gallus gallus gga-mir-7-3 precursor miRNA
Gene family
MIPF0000022; mir-7

Literature search
10 open access papers mention gga-mir-7-3
(181 sentences)

Sequence

33089 reads, 442 reads per million, 5 experiments
cuguggucuggcucugugUGGAAGACUAGUGAUUUUGUUGuuaugauuuauaaaggugacaacaaaucauagccugccauacagcacagaucuuc
....((((((...((((((((.((.(((.((((((.((((((((...........))))))))))))))))).)).))))))))..))))))...

Structure
cugu      gcu        A  A   G      U        gauu 
    ggucug   cugugUGG AG CUA UGAUUU GUUGuuau    u
    ||||||   |||||||| || ||| |||||| ||||||||    a
    cuagac   gacauacc uc gau acuaaa caacagug    u
-cuu      -ac        g  c   -      -        gaaa 


Annotation confidence High
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Genome context
chr28: 4892799-4892893 [-]

Database links

Mature gga-miR-7

Accession MIMAT0001157
Description Gallus gallus gga-miR-7 mature miRNA
Sequence 19 - UGGAAGACUAGUGAUUUUGUUG - 40
Evidence experimental
cloned [2]
Database links
Predicted targets

References

  1. PubMed ID: 18256158
    MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
    "J Virol (2008) 82:4007-4015


  2. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  3. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004