Stem-loop sequence gga-mir-196-1

Accession

MI0001268 (change log)

Description

Gallus gallus miR-196-1 stem-loop

Gene family

MIPF0000031; mir-196

Literature search

7 open access papers mention gga-mir-196-1
(10 sentences)

Stem-loop

   ugaacuag     cucu                c     g   ggc    a 
5'         aacug    gugaauuagguaguuu auguu uug   uuua a
           |||||    |||||||||||||||| ||||| |||   |||| u
3'         uugac    cauuuaguccaucaaa uacaa aac   aaau u
   -------a     --cu                c     g   -ac    u 

Deep sequencing

207758 reads, 2.5e+03 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr27: 3775036-3775130 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:
• RNAcentral:URS000075D111_9031
• miRBase Tracker:MI0001268

Mature sequence gga-miR-196-5p

• Accession: MIMAT0001121
• Sequence: 24 - uagguaguuucauguuguugg - 44
• Deep sequencing: 1021521 reads, 5 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS00000D9842_9031
• Predicted targets:
  • TargetScanVert:gga-miR-196-5p
  • miRDB:gga-miR-196-5p

Mature sequence gga-miR-196-1-3p

• Accession: MIMAT0031017
• Sequence: 62 - caagaacaucaaacuaccugau - 83
• Deep sequencing: 3149 reads, 2 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:gga-miR-196-1-3p
  • miRDB:gga-miR-196-1-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. " McBride D, Carre W, Law A, Clinton M Unpublished.
3. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).