miRBase entry: gga-mir-196-1

Stem-loop gga-mir-196-1


Accession
MI0001268
Description
Gallus gallus gga-mir-196-1 precursor miRNA
Gene family
MIPF0000031; mir-196

Literature search
7 open access papers mention gga-mir-196-1
(10 sentences)

Sequence

137875 reads, 2028 reads per million, 5 experiments
ugaacuagaacugcucugugaauUAGGUAGUUUCAUGUUGUUGGgcuuuaaauuuuaaacaCAAGAACAUCAAACUACCUGAUuuacuccaguua
........(((((....((((((((((((((((.(((((.(((.(.(((((...)))))).))).))))).))))))))))))))))..))))).

Structure
ugaacuag     cucu                C     G   G c     a 
        aacug    gugaauUAGGUAGUUU AUGUU UUG g uuuaa  
        |||||    |||||||||||||||| ||||| ||| | ||||| u
        uugac    cauuUAGUCCAUCAAA UACAA AAC c aaauu  
-------a     --cu                C     G   a -     u 


Annotation confidence High
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Genome context
chr27: 3775036-3775130 [+]

Database links

Mature gga-miR-196-5p

Accession MIMAT0001121
Description Gallus gallus gga-miR-196-5p mature miRNA
Sequence 24 - UAGGUAGUUUCAUGUUGUUGG - 44
Evidence experimental
cloned [2]
Database links
Predicted targets

Mature gga-miR-196-1-3p

Accession MIMAT0031017
Description Gallus gallus gga-miR-196-1-3p mature miRNA
Sequence 62 - CAAGAACAUCAAACUACCUGAU - 83
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716


  2. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  3. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45