miRBase entry: gga-mir-205a

Stem-loop gga-mir-205a


Accession
MI0001267
Description
Gallus gallus gga-mir-205a precursor miRNA
Gene family
MIPF0000058; mir-205

Literature search
4 open access papers mention gga-mir-205a
(9 sentences)

Sequence

195 reads, 10 reads per million, 5 experiments
gacaauccauggguucuguugUCCUUCAUUCCACCGGAGUCUGucucguaccuaaccagauuucaguggagugaagcacaagagacauggagauga
..((.((((((...(((.((((.(((((((((((.((((((((.............)))))))).))))))))))).)))).)))))))))..)).

Structure
ga  -a      ggu   g    C           C        ucucg 
  ca  uccaug   ucu uugU CUUCAUUCCAC GGAGUCUG     u
  ||  ||||||   ||| |||| ||||||||||| ||||||||     a
  gu  agguac   aga aaca gaagugaggug cuuuagac     c
-a  ag      ---   g    c           a        caauc 


Annotation confidence Not enough data
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Comments
This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context
chr26: 3076070-3076165 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-205a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-205a

Accession MIMAT0001184
Description Gallus gallus gga-miR-205a mature miRNA
Sequence 22 - UCCUUCAUUCCACCGGAGUCUG - 43
Evidence not_experimental

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716