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miRBase |
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Stem-loop sequence gga-let-7j |
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Accession | MI0001262 (change log) | |||||
Description | Gallus gallus let-7j stem-loop | |||||
Gene family | MIPF0000002; let-7 | |||||
Literature search |
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45 open access papers mention gga-let-7j | |||||
Stem-loop |
---- ug gu --------u g 5' g agguaguag uguauaguu gguggga gga | ||||||||| ||||||||| ||||||| || u 3' c uccguuauc acauaucaa uuacccu ucu aauu cu ug uaguggacu g |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Comments |
This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken. |
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence gga-let-7j-5p |
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Accession | MIMAT0001181 |
Sequence |
2 - ugagguaguagguuguauaguu - 23 |
Deep sequencing | 12630451 reads, 5 experiments |
Evidence | experimental; Illumina [2] |
Database links |
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Predicted targets |
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Mature sequence gga-let-7j-3p |
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Accession | MIMAT0026542 |
Sequence |
59 - cuauacagucuauugccuuccu - 80 |
Deep sequencing | 494 reads, 5 experiments |
Evidence | experimental; Illumina [2] |
Predicted targets |
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References |
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1 |
PMID:15592404
"Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
Nature. 432:695-716(2004).
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2 |
PMID:23034410
"Birth and expression evolution of mammalian microRNA genes"
Genome Res. 23:34-45(2013).
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