Stem-loop sequence gga-mir-100

AccessionMI0001258 (change log)
DescriptionGallus gallus miR-100 stem-loop
Gene family MIPF0000033; mir-10
Literature search

12 open access papers mention gga-mir-100
(28 sentences)

Stem-loop 
     u -uu c    a   cg     c   a      guca 
5' cc g   g caca acc  uagau cga cuugug    u
   || |   | |||| |||  ||||| ||| ||||||    a
3' gg c   c gugu ugg  aucua guu gaacac    u
     u ugu u    a   au     u   c      accu
Get sequence
Deep sequencing
1819151 reads, 2.25e+04 reads per million, 5 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Gallus_gallus-5.0; GCA_000002315.3) Overlapping transcripts
chr24: 3335097-3335176 [+]
intergenic
Clustered miRNAs
< 10kb from gga-mir-100
gga-mir-100chr24: 3335097-3335176 [+]
gga-mir-6675chr24: 3341724-3341832 [+]
gga-let-7a-2chr24: 3343196-3343267 [+]
Database links

Mature sequence gga-miR-100-5p

Accession MIMAT0001178
Sequence

13 -  

aacccguagauccgaacuugug

 - 34

Get sequence
Deep sequencing1818996 reads, 5 experiments
Evidence experimental; Illumina [2]
Database links
Predicted targets

Mature sequence gga-miR-100-3p

Accession MIMAT0026539
Sequence

49 -  

aagcuuguaucuauagguaug

 - 69

Get sequence
Deep sequencing155 reads, 5 experiments
Evidence experimental; Illumina [2]
Predicted targets

References

1
PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2
" McBride D, Carre W, Law A, Clinton M Unpublished.
3
PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).