Stem-loop sequence gga-mir-30e

Accession

MI0001256 (change log)

Description

Gallus gallus miR-30e stem-loop

Gene family

MIPF0000005; mir-30

Literature search

22 open access papers mention gga-mir-30e
(60 sentences)

Stem-loop

   c g       auc  u             uu           g gag  g 
5'  g ggcaguc   gc gcuguaaacaucc  gacuggaagcu u   gu u
    | |||||||   || |||||||||||||  ||||||||||| |   ||  
3'  c ucgucgg   cg cgacauuuguagg  cugacuuucgg g   cg c
   a g       --a  u             --           g --g  a 

Deep sequencing

5149776 reads, 6.26e+04 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr23: 4946132-4946227 [+]
• Overlapping transcripts:

  sense

  ENSGALT00000035036 ; NFYC-201; intron 4

Clustered miRNAs

< 10kb from gga-mir-30e

• gga-mir-30e: chr23: 4946132-4946227 [+]
• gga-mir-30c-1: chr23: 4947355-4947443 [+]

Database links

• EntrezGene:
• RNAcentral:URS000075A9D1_9031
• miRBase Tracker:MI0001256

Mature sequence gga-miR-30e-5p

• Accession: MIMAT0001177
• Sequence: 19 - uguaaacauccuugacugg - 37
• Deep sequencing: 4805811 reads, 5 experiments
• Evidence: experimental; cloned [2], Illumina [3]
• Database links:
  • RNAcentral:URS0000759DE0_9031
• Predicted targets:
  • TargetScanVert:gga-miR-30e-5p
  • miRDB:gga-miR-30e-5p

Mature sequence gga-miR-30e-3p

• Accession: MIMAT0026538
• Sequence: 62 - uuucagucggauguuuacagc - 82
• Deep sequencing: 343683 reads, 5 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS000075AA43_9031
• Predicted targets:
  • TargetScanVert:gga-miR-30e-3p
  • miRDB:gga-miR-30e-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. PMID:16750530 "Identification of microRNAs from different tissues of chicken embryo and adult chicken" Xu H, Wang X, Du Z, Li N FEBS Lett. 580:3610-3616(2006).
3. " McBride D, Carre W, Law A, Clinton M Unpublished.
4. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).