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miRBase |
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Stem-loop sequence gga-mir-1b |
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Accession | MI0001254 (change log) | |||||||
Description | Gallus gallus miR-1b stem-loop | |||||||
Gene family | MIPF0000038; mir-1 | |||||||
Literature search |
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26 open access papers mention gga-mir-1b | |||||||
Stem-loop |
--- c gc ugga g 5' acauacuucuu auau ccaua guc g ||||||||||| |||| ||||| ||| 3' uguaugaagaa ugua gguau cgg c cua u -a --ug c |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Comments |
This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken. |
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence gga-miR-1b-5p |
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Accession | MIMAT0026536 |
Sequence |
1 - acauacuucuucauaugcccaua - 23 |
Deep sequencing | 12 reads, 1 experiments |
Evidence | experimental; Illumina [2] |
Predicted targets |
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Mature sequence gga-miR-1b-3p |
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Accession | MIMAT0001175 |
Sequence |
42 - uggaauguuaagaaguaugua - 62 |
Deep sequencing | 8465534 reads, 5 experiments |
Evidence | experimental; Illumina [2] |
Database links |
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Predicted targets |
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References |
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1 |
PMID:15592404
"Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
Nature. 432:695-716(2004).
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2 |
PMID:23034410
"Birth and expression evolution of mammalian microRNA genes"
Genome Res. 23:34-45(2013).
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