miRBase entry: gga-mir-34a

Stem-loop gga-mir-34a


Accession
MI0001251
Description
Gallus gallus gga-mir-34a precursor miRNA
Gene family
MIPF0000039; mir-34

Literature search
16 open access papers mention gga-mir-34a
(52 sentences)

Sequence

2745 reads, 50 reads per million, 5 experiments
gccagcugugaguguuucuuUGGCAGUGUCUUAGCUGGUUGUUgugagcaauaguuaaggaagCAAUCAGCAAGUAUACUGCCCUAgaagugcuacacauuguugggcc
.((((((((((((((((((..(((((((((((.((((((((((...(((....))).....))))))))))))).))))))))..))))))))).))))..)))))...

Structure
--g     --    -         uU        -   A          --gug   a 
   ccagc  ugug aguguuucu  GGCAGUGU CUU GCUGGUUGUU     agc a
   |||||  |||| |||||||||  |||||||| ||| ||||||||||     |||  
   gguug  acac ucgugaagA  CCGUCAUA GAA CGACUAACga     uug u
ccg     uu    a         UC        U   -          aggaa   a 


Annotation confidence Not enough data
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Genome context
chr21: 3262992-3263100 [-]

Database links

Mature gga-miR-34a-5p

Accession MIMAT0001173
Description Gallus gallus gga-miR-34a-5p mature miRNA
Sequence 21 - UGGCAGUGUCUUAGCUGGUUGUU - 43
Evidence experimental
cloned [2], Illumina [3]
Database links
Predicted targets

Mature gga-miR-34a-3p

Accession MIMAT0026535
Description Gallus gallus gga-miR-34a-3p mature miRNA
Sequence 64 - CAAUCAGCAAGUAUACUGCCCUA - 86
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716

  2. PubMed ID: 18256158
    MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
    "J Virol (2008) 82:4007-4015


  3. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  4. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45