Stem-loop gga-mir-200b

Accession

MI0001250

Description

Gallus gallus gga-mir-200b precursor miRNA

Gene family

MIPF0000019; mir-8

Literature search

20 open access papers mention gga-mir-200b
(50 sentences)

Sequence

70913 reads, 1057 reads per million, 5 experiments

gccauuaccaUCUUACUGGGCAGCAUUGGAuguucucuguuuuucUAAUACUGCCUGGUAAUGAUGAUugugguguuucgugcac
(((((...(((((((((((((((.((((((.............)))))).))))))))))).))))...)))))...........

Structure

-----------     uac    -           C      uguuc 
           gccau   caUC UUACUGGGCAG AUUGGA     u
           |||||   |||| ||||||||||| ||||||     c
           uggug   GUAG AAUGGUCCGUC UAAUcu     u
cacgugcuuug     uUA    U           A      uuuug 

Annotation confidence High

Genome context

chr21: 2594262-2594346 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-mir-200b

Mature gga-miR-200b-3p

• Accession: MIMAT0001172
• Description: Gallus gallus gga-miR-200b-3p mature miRNA
• Sequence: 46 - UAAUACUGCCUGGUAAUGAUGAU - 68
• Evidence: experimental ; Illumina [2]

Mature gga-miR-200b-5p

• Accession: MIMAT0026534
• Description: Gallus gallus gga-miR-200b-5p mature miRNA
• Sequence: 11 - UCUUACUGGGCAGCAUUGGA - 30
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45