Stem-loop sequence gga-mir-200b

AccessionMI0001250 (change log)
DescriptionGallus gallus miR-200b stem-loop
Gene family MIPF0000019; mir-8
Literature search

20 open access papers mention gga-mir-200b
(50 sentences)

Stem-loop 
   -----------     uac    -    ug     c      uguuc 
5'            gccau   cauc uuac  ggcag auugga     u
              |||||   |||| ||||  ||||| ||||||     c
3'            uggug   guag aaug  ccguc uaaucu     u
   cacgugcuuug     uua    u    gu     a      uuuug
Get sequence
Deep sequencing
86705 reads, 960 reads per million, 5 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Gallus_gallus-5.0; GCA_000002315.3) Overlapping transcripts
chr21: 2594262-2594346 [-]
intergenic
Clustered miRNAs
< 10kb from gga-mir-200b
gga-mir-200bchr21: 2594262-2594346 [-]
gga-mir-200achr21: 2591937-2592023 [-]
gga-mir-429chr21: 2589432-2589515 [-]
Database links

Mature sequence gga-miR-200b-5p

Accession MIMAT0026534
Sequence

11 -  

ucuuacugggcagcauugga

 - 30

Get sequence
Deep sequencing4496 reads, 4 experiments
Evidence experimental; Illumina [2]
Database links
Predicted targets

Mature sequence gga-miR-200b-3p

Accession MIMAT0001172
Sequence

46 -  

uaauacugccugguaaugaugau

 - 68

Get sequence
Deep sequencing82208 reads, 5 experiments
Evidence experimental; Illumina [2]
Database links
Predicted targets

References

1
PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2
" McBride D, Carre W, Law A, Clinton M Unpublished.
3
PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).