miRBase entry: gga-mir-133a-2

Stem-loop gga-mir-133a-2


Accession
MI0001248
Description
Gallus gallus gga-mir-133a-2 precursor miRNA
Gene family
MIPF0000029; mir-133

Literature search
26 open access papers mention gga-mir-133a-2
(119 sentences)

Sequence

15459 reads, 219 reads per million, 5 experiments
gugaggccaaaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAUCaacuguucaauggauUUGGUCCCCUUCAACCAGCUGUagcugugcauugau
.........(((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))...

Structure
gugaggcca     uuu    a       AA  U  A        aacug 
         aaugc   gcua AGCUGGU  AA GG ACCAAAUC     u
         |||||   |||| |||||||  || || ||||||||      
         uuacg   cgaU UCGACCA  UU CC UGGUUuag     u
------uag     ugu    G       AC  C  C        guaac 


Annotation confidence Not enough data
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Comments
This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context
chr20: 8326963-8327058 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-133a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-133a-3p

Accession MIMAT0001126
Description Gallus gallus gga-miR-133a-3p mature miRNA
Sequence 61 - UUGGUCCCCUUCAACCAGCUGU - 82
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature gga-miR-133a-5p

Accession MIMAT0026509
Description Gallus gallus gga-miR-133a-5p mature miRNA
Sequence 23 - AGCUGGUAAAAUGGAACCAAAUC - 45
Evidence experimental
Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45