Stem-loop sequence gga-mir-133a-2

Accession

MI0001248 (change log)

Description

Gallus gallus miR-133a-2 stem-loop

Gene family

MIPF0000029; mir-133

Literature search

26 open access papers mention gga-mir-133a-2
(116 sentences)

Stem-loop

   gugaggcca     uuu    a       aa  u  a        aacug 
5'          aaugc   gcua agcuggu  aa gg accaaauc     u
            |||||   |||| |||||||  || || ||||||||      
3'          uuacg   cgau ucgacca  uu cc ugguuuag     u
   ------uag     ugu    g       ac  c  c        guaac 

Deep sequencing

23549 reads, 80 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr20: 8326963-8327058 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-133a-2

• gga-mir-1773: chr20: 8317045-8317122 [+]
• gga-mir-133a-2: chr20: 8326963-8327058 [+]

Database links

• EntrezGene:
• RNAcentral:URS000075C964_9031
• miRBase Tracker:MI0001248

Mature sequence gga-miR-133a-5p

• Accession: MIMAT0026509
• Sequence: 23 - agcugguaaaauggaaccaaauc - 45
• Deep sequencing: 5934 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00004AF952_9031
• Predicted targets:
  • TargetScanVert:gga-miR-133a-5p
  • miRDB:gga-miR-133a-5p

Mature sequence gga-miR-133a-3p

• Accession: MIMAT0001126
• Sequence: 61 - uugguccccuucaaccagcugu - 82
• Deep sequencing: 41156 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00004883E0_9031
• Predicted targets:
  • TargetScanVert:gga-miR-133a-3p
  • miRDB:gga-miR-133a-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).