miRBase entry: gga-mir-219a

Stem-loop gga-mir-219a


Accession
MI0001246
Description
Gallus gallus gga-mir-219a precursor miRNA
Gene family
MIPF0000044; mir-219

Literature search
5 open access papers mention gga-mir-219a
(14 sentences)

Sequence

109876 reads, 687 reads per million, 5 experiments
cucugcuccUGAUUGUCCAAACGCAAUUCUugugcgcuggagccguacgaaccaagaauugugucuggacaucuguagcagagau
(((((((.(.(((.(((((.(((((((((((((((((....).))))).....))))))))))).)))))))).).)))))))..

Structure
--       c U   U     A           -----     - u 
  cucugcu c GAU GUCCA ACGCAAUUCUu     gugcg c g
  ||||||| | ||| ||||| |||||||||||     ||||| |  
  gagacga g cua caggu uguguuaagaa     caugc g g
ua       u u   -     c           ccaag     c a 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr17: 5485248-5485332 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-219a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-219a

Accession MIMAT0001170
Description Gallus gallus gga-miR-219a mature miRNA
Sequence 10 - UGAUUGUCCAAACGCAAUUCU - 30
Evidence experimental
cloned [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004