Stem-loop sequence gga-mir-219a

Accession

MI0001246 (change log)

Description

Gallus gallus miR-219a stem-loop

Gene family

MIPF0000044; mir-219

Literature search

5 open access papers mention gga-mir-219a
(14 sentences)

Stem-loop

   --       c u   u     a           -----     - u 
5'   cucugcu c gau gucca acgcaauucuu     gugcg c g
     ||||||| | ||| ||||| |||||||||||     ||||| |  
3'   gagacga g cua caggu uguguuaagaa     caugc g g
   ua       u u   -     c           ccaag     c a 

Deep sequencing

63453 reads, 460 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr17: 5485248-5485332 [+]
• Overlapping transcripts:

  antisense

  ENSGALT00000028985 ; gga-mir-219b-201; exon 1

Clustered miRNAs

< 10kb from gga-mir-219a

• gga-mir-219b: chr17: 5485245-5485333 [-]
• gga-mir-219a: chr17: 5485248-5485332 [+]

Database links

• EntrezGene:
• miRBase Tracker:MI0001246

Mature sequence gga-miR-219a

• Accession: MIMAT0001170
• Sequence: 10 - ugauuguccaaacgcaauucu - 30
• Deep sequencing: 664 reads, 4 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:gga-miR-219a
  • miRDB:gga-miR-219a

References

1. PMID:18463306 "Conservation of small RNA pathways in platypus" Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ Genome Res. 18:995-1004(2008).