Stem-loop sequence gga-mir-130b

Accession

MI0001239 (change log)

Description

Gallus gallus miR-130b stem-loop

Gene family

MIPF0000034; mir-130

Literature search

11 open access papers mention gga-mir-130b
(58 sentences)

Stem-loop

   gggcgggcugccc       cc         a  -  ca g 
5'              cucuuuc  uguugcacu cu gu  c g
                |||||||  ||||||||| || ||  |  
3'              gggaaag  auaacguga ga cg  g u
   ------ugacugc       ua         c  g  ac c 

Deep sequencing

20391 reads, 160 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr15: 399151-399227 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-130b

• gga-mir-130a: chr15: 407968-408050 [-]
• gga-mir-301a: chr15: 406743-406835 [-]
• gga-mir-454: chr15: 400264-400384 [-]
• gga-mir-130b: chr15: 399151-399227 [-]

Database links

• EntrezGene:
• miRBase Tracker:MI0001239

Mature sequence gga-miR-130b-5p

• Accession: MIMAT0026530
• Sequence: 13 - ccucuuucccuguugcacuacu - 34
• Deep sequencing: 388 reads, 4 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:gga-miR-130b-5p
  • miRDB:gga-miR-130b-5p

Mature sequence gga-miR-130b-3p

• Accession: MIMAT0001165
• Sequence: 52 - cagugcaauaaugaaagggcgu - 73
• Deep sequencing: 20000 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:gga-miR-130b-3p
  • miRDB:gga-miR-130b-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. " McBride D, Carre W, Law A, Clinton M Unpublished.
3. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).