miRBase entry: gga-mir-135a-1

Stem-loop gga-mir-135a-1


Accession
MI0001231
Description
Gallus gallus gga-mir-135a-1 precursor miRNA
Gene family
MIPF0000028; mir-135

Literature search
8 open access papers mention gga-mir-135a-1
(10 sentences)

Sequence

23854 reads, 269 reads per million, 5 experiments
gccucacuguccugUAUGGCUUUUUAUUCCUAUGUGAuuauacaucccgcuucAUAUAGGGAUUGAAGCCGUGCAaggcgcugggguc
((((((.((((.(((((((((((..((((((((((((..............)))))))))))).))))))))))).)))).)))))).

Structure
-      c    c           UU            uuauac 
 gccuca uguc ugUAUGGCUUU  AUUCCUAUGUGA      a
 |||||| |||| |||||||||||  ||||||||||||       
 uggggu gcgg ACGUGCCGAAG  UAGGGAUAUAcu      u
c      c    a           -U            ucgccc 


Annotation confidence High
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Genome context
chr12: 2998997-2999084 [-]

Database links

Mature gga-miR-135a-5p

Accession MIMAT0001099
Description Gallus gallus gga-miR-135a-5p mature miRNA
Sequence 15 - UAUGGCUUUUUAUUCCUAUGUGA - 37
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature gga-miR-135a-1-3p

Accession MIMAT0031036
Description Gallus gallus gga-miR-135a-1-3p mature miRNA
Sequence 54 - AUAUAGGGAUUGAAGCCGUGCA - 75
Evidence experimental
Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45