Stem-loop sequence gga-mir-135a-1

Accession

MI0001231 (change log)

Description

Gallus gallus miR-135a-1 stem-loop

Gene family

MIPF0000028; mir-135

Literature search

8 open access papers mention gga-mir-135a-1
(10 sentences)

Stem-loop

   -      c    c           uu            uuauac 
5'  gccuca uguc uguauggcuuu  auuccuauguga      a
    |||||| |||| |||||||||||  ||||||||||||       
3'  uggggu gcgg acgugccgaag  uagggauauacu      u
   c      c    a           -u            ucgccc 

Deep sequencing

27945 reads, 200 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr12: 2998997-2999084 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:
• RNAcentral:URS000075A9D5_9031
• miRBase Tracker:MI0001231

Mature sequence gga-miR-135a-5p

• Accession: MIMAT0001099
• Sequence: 15 - uauggcuuuuuauuccuauguga - 37
• Deep sequencing: 75830 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00000DF6D0_9031
• Predicted targets:
  • TargetScanVert:gga-miR-135a-5p
  • miRDB:gga-miR-135a-5p

Mature sequence gga-miR-135a-1-3p

• Accession: MIMAT0031036
• Sequence: 54 - auauagggauugaagccgugca - 75
• Deep sequencing: 2668 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000075D254_9031
• Predicted targets:
  • TargetScanVert:gga-miR-135a-1-3p
  • miRDB:gga-miR-135a-1-3p

References

1. PMID:18463306 "Conservation of small RNA pathways in platypus" Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ Genome Res. 18:995-1004(2008).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).