Stem-loop sequence gga-mir-128-1

Accession

MI0001217 (change log)

Previous IDs

gga-mir-128a

Description

Gallus gallus miR-128-1 stem-loop

Gene family

MIPF0000048; mir-128

Literature search

10 open access papers mention gga-mir-128-1
(42 sentences)

Stem-loop

   u    u      uuc       uaa      cu       u 
5'  gagc guugaa   ggggccg   cacugu  gagaggu u
    |||| ||||||   |||||||   ||||||  |||||||  
3'  uucg cgacuu   cucuggc   gugaca  cucuuua a
   c    u      uuu       caa      --       u 

Deep sequencing

111420 reads, 1.02e+03 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr7: 30766323-30766404 [+]
• Overlapping transcripts:

  sense

  ENSGALT00000019996 ; R3HDM1-201; intron 18

Database links

• EntrezGene:
• RNAcentral:URS00006F80D1_9031
• miRBase Tracker:MI0001217

Mature sequence gga-miR-128-1-5p

• Accession: MIMAT0031096
• Sequence: 15 - cggggccguaacacugucugaga - 37
• Deep sequencing: 354 reads, 5 experiments
• Evidence: experimental; Illumina [3]
• Predicted targets:
  • TargetScanVert:gga-miR-128-1-5p
  • miRDB:gga-miR-128-1-5p

Mature sequence gga-miR-128-3p

• Accession: MIMAT0001123
• Previous IDs: gga-miR-128b
• Sequence: 50 - ucacagugaaccggucucuuu - 70
• Deep sequencing: 222032 reads, 5 experiments
• Evidence: experimental; cloned [2], Northern [2], Illumina [3]
• Database links:
  • RNAcentral:URS000024A59E_9031
• Predicted targets:
  • TargetScanVert:gga-miR-128-3p
  • miRDB:gga-miR-128-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. PMID:16750530 "Identification of microRNAs from different tissues of chicken embryo and adult chicken" Xu H, Wang X, Du Z, Li N FEBS Lett. 580:3610-3616(2006).
3. " McBride D, Carre W, Law A, Clinton M Unpublished.
4. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).