Stem-loop sequence gga-mir-203a

Accession

MI0001214 (change log)

Previous IDs

gga-mir-203

Description

Gallus gallus miR-203 stem-loop

Gene family

MIPF0000108; mir-203

Literature search

17 open access papers mention gga-mir-203a
(165 sentences)

Stem-loop

   -----   -a     c     gc         u    g    a     cuc 
5'      cuc  gccuc uuggu  agugguucu aaca uuca caguu   u
        |||  ||||| |||||  ||||||||| |||| |||| |||||   a
3'      ggg  cggag gacca  ucaccagga uugu aagu guuaa   u
   gcuac   cc     c     gu         u    a    -     uac 

Deep sequencing

6023 reads, 520 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr5: 50769283-50769380 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-203a

• gga-mir-203b: chr5: 50769282-50769373 [-]
• gga-mir-203a: chr5: 50769283-50769380 [+]

Database links

• EntrezGene:
• RNAcentral:URS000075AF39_9031
• miRBase Tracker:MI0001214

Mature sequence gga-miR-203a

• Accession: MIMAT0001146
• Previous IDs: gga-miR-203
• Sequence: 56 - gugaaauguuuaggaccacuug - 77
• Deep sequencing: 6013 reads, 5 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS0000028BBC_9031
• Predicted targets:
  • TargetScanVert:gga-miR-203a
  • miRDB:gga-miR-203a

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. " McBride D, Carre W, Law A, Clinton M Unpublished.